PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g062970.1
Common NameMTR_5g062970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 240aa    MW: 26852.1 Da    PI: 7.6642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g062970.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.3e-20138225183
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+k+lt+sd ++ + +++p ++++ +      + ++  s++l+++d +gr W+ ++iyr+ks+r+++++GW +Fv+ ++L +gD++vF 
  Medtr5g062970.1 138 FVKILTQSDCNSGCGFIVPLPCVDLIlpklslD-DPMPSQKLSVTDIQGRIWQYTHIYRGKSKRHLFSRGWTSFVNNKKLVAGDSFVFI 225
                      89*********************888****963.4455679***********************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-23135230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-25136228IPR015300DNA-binding pseudobarrel domain
CDDcd100176.37E-18137224No hitNo description
PfamPF023626.8E-17138225IPR003340B3 DNA binding domain
SMARTSM010198.2E-11138235IPR003340B3 DNA binding domain
PROSITE profilePS5086310.729138239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MMLITISNRA QSSALLSDTG ELHSEAFPTK SIFTIPTKIW QKCVGASVKI PKLHSKVYYF  60
PQGHLKHVSP HTIITLLHCY PPSISCIISA VDLLVDPHTD EVFAKLLLTP VMDGHGHEQE  120
APPEVPAEDD DGYNVVSFVK ILTQSDCNSG CGFIVPLPCV DLILPKLSLD DPMPSQKLSV  180
TDIQGRIWQY THIYRGKSKR HLFSRGWTSF VNNKKLVAGD SFVFIKNSAW WLMLNWHHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-373823922225Auxin response factor 1
4ldw_A1e-373823922225Auxin response factor 1
4ldw_B1e-373823922225Auxin response factor 1
4ldx_A1e-373823922225Auxin response factor 1
4ldx_B1e-373823922225Auxin response factor 1
4ldy_A1e-373823922225Auxin response factor 1
4ldy_B1e-373823922225Auxin response factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9141320.0CU914132.2 Medicago truncatula chromosome 5 clone mth2-49m20, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615045.11e-178auxin response factor, putative
SwissprotQ84WU67e-56ARFQ_ARATH; Auxin response factor 17
TrEMBLG7KAA11e-178G7KAA1_MEDTR; Auxin response factor, putative
STRINGGLYMA13G02410.15e-56(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.14e-57auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]